Genomics/Transcriptomics/Bioinformatics Neuroanatomy Songbird: General
NCBI: Zebra finch genome: NCBI page for the latest zebra finch genome assembly.
NCBI: Genome annotation page: The latest zebra finch genome annotation by NCBI/RefSeq.
Ensembl: Zebra Finch: Latest Ensembl release of the zebra finch genome (see also UCSC BLAT Browser).
UCSC ZF Blat Browser: Browser for BLAT mapping sequences to the Jul. 2008 Taeniopygia guttata draft v3.2.4 genome assembly (and other species).
Brain Transcriptome Library: Database of songbird cDNA clone information (Jarvis lab; Duke University). Clones are annotated with behavioral information, and are linked to information about homologous genes in other species.
CUGI BAC/EST Resources: The zebra finch Estima collection and BAC library are available as a full library or as individual clones.
NCBI ZF Nucleotide BLAST: Zebra Finch Nucleotide BLAST search.
ZF KEGG Pathway Database: Zebra finch specific KEGG Pathway maps assembled from RefSeqs information.
Ensembl: Chicken: The latest release of the chicken genome from Ensembl.
GEISHA: Online repository of in situ hybridization and corresponding metadata for genes expressed in the chicken embryo during the first six days of development.
UCSC VisiGene Image Browser: Browser for in situ image collections in mice and frogs at varying points in development.
GenePaint.org: Digital atlas of gene expression patterns in the mouse.
The Allen Mouse Brain Atlas: Genome-wide, high-resolution atlas of gene expression throughout the adult mouse brain.
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